STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uso1USO1 vesicle transport factor. (948 aa)    
Predicted Functional Partners:
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.993
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.993
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.985
gosr1
Golgi SNAP receptor complex member 1.
    
 0.984
ENSPREP00000003373
Uncharacterized protein.
   
 0.970
ENSPREP00000010354
Bet1 golgi vesicular membrane trafficking protein-like.
   
 0.970
golga2
Golgin A2.
   
 0.954
copb1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.954
LOC103458105
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.937
ENSPREP00000004967
Uncharacterized protein.
   
 0.937
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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