STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479189RIIa domain-containing protein. (298 aa)    
Predicted Functional Partners:
tpgs1
Uncharacterized protein.
      
 0.934
ENSPREP00000002466
GAS domain-containing protein.
    
 
 0.746
LOC103472134
GAS domain-containing protein.
    
 
 0.746
fbxl13
F-box and leucine-rich repeat protein 13.
   
 
 0.733
LOC103466129
Uncharacterized protein.
   
   0.676
ENSPREP00000004409
Uncharacterized protein.
   
   0.665
ENSPREP00000001443
Uncharacterized protein.
    
   0.654
cfap45
Cilia and flagella associated protein 45.
    
   0.654
drc3
Dynein regulatory complex subunit 3.
    
  0.654
odf3b
Tripartite motif containing 35-30.
    
   0.654
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.