STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
etf1Eukaryotic translation termination factor 1b. (437 aa)    
Predicted Functional Partners:
ENSPREP00000003924
ATP-binding cassette, sub-family E (OABP), member 1.
   
 
 0.998
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.993
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.981
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.913
LOC103468154
G1 to S phase transition 1, like.
   
 0.912
gspt1
G1 to S phase transition 1.
   
 0.912
LOC103460099
Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
  
 0.904
rps27a
Ribosomal protein S27a.
   
 0.899
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.897
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
    
 0.885
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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