STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465653Si:ch1073-174d20.2; Belongs to the AAA ATPase family. (667 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.890
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.840
ENSPREP00000006614
Prohibitin.
   
 0.836
phb2
Prohibitin.
   
 0.836
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
    
 
 0.816
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.812
pmpca
Peptidase (mitochondrial processing) alpha.
  
 0.774
oma1
OMA1 zinc metallopeptidase.
  
 0.766
mrpl32
Mitochondrial ribosomal protein L32.
  
 0.764
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.743
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.