STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465653Si:ch1073-174d20.2; Belongs to the AAA ATPase family. (667 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.883
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.820
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
   
   0.814
ENSPREP00000006614
Prohibitin.
   
 0.764
phb2
Prohibitin.
   
 0.764
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.759
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.756
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.746
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.735
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.735
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.