STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463837Uncharacterized protein. (296 aa)    
Predicted Functional Partners:
LOC103479386
Zgc:101559.
  
  
 
0.904
rab33b
RAB33B, member RAS oncogene family a.
  
  
 
0.903
uso1
USO1 vesicle transport factor.
   
 0.719
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.709
trappc8
Trafficking protein particle complex 8.
    
 0.705
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.692
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.680
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.675
trappc6a
Trafficking protein particle complex 6b-like.
    
 0.673
gbf1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.643
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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