rbis protein (Poecilia reticulata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

rbis

Si:ch211-282b22.1. (98 aa)

Predicted Functional Partners:

pes1

0.725

nob1

0.666

lsm12

0.608

dcps

0.604

wdr18

0.604

dimt1

0.601

mak16

0.597

Clg4h19orf24

0.596

bysl

0.589

lrrcc1

0.572

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Clg4h19orf24	lrrcc1	ENSPREP00000001230	ENSPREP00000020425	Si:ch211-262i1.6.	Leucine rich repeat and coiled-coil centrosomal protein 1.	0.596
Clg4h19orf24	rbis	ENSPREP00000001230	ENSPREP00000002638	Si:ch211-262i1.6.	Si:ch211-282b22.1.	0.596
Clg4h19orf24	wdr18	ENSPREP00000001230	ENSPREP00000007976	Si:ch211-262i1.6.	WD repeat domain 18.	0.598
bysl	dimt1	ENSPREP00000006398	ENSPREP00000004395	Bystin-like.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.993
bysl	mak16	ENSPREP00000006398	ENSPREP00000025730	Bystin-like.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.972
bysl	nob1	ENSPREP00000006398	ENSPREP00000011245	Bystin-like.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.999
bysl	pes1	ENSPREP00000006398	ENSPREP00000033339	Bystin-like.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.962
bysl	rbis	ENSPREP00000006398	ENSPREP00000002638	Bystin-like.	Si:ch211-282b22.1.	0.589
bysl	wdr18	ENSPREP00000006398	ENSPREP00000007976	Bystin-like.	WD repeat domain 18.	0.673
dcps	lsm12	ENSPREP00000004902	ENSPREP00000015177	Decapping enzyme, scavenger.	LSM12 homolog b.	0.584
dcps	rbis	ENSPREP00000004902	ENSPREP00000002638	Decapping enzyme, scavenger.	Si:ch211-282b22.1.	0.604
dimt1	bysl	ENSPREP00000004395	ENSPREP00000006398	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Bystin-like.	0.993
dimt1	mak16	ENSPREP00000004395	ENSPREP00000025730	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.756
dimt1	nob1	ENSPREP00000004395	ENSPREP00000011245	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.985
dimt1	pes1	ENSPREP00000004395	ENSPREP00000033339	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.822
dimt1	rbis	ENSPREP00000004395	ENSPREP00000002638	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Si:ch211-282b22.1.	0.601
dimt1	wdr18	ENSPREP00000004395	ENSPREP00000007976	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	WD repeat domain 18.	0.635
lrrcc1	Clg4h19orf24	ENSPREP00000020425	ENSPREP00000001230	Leucine rich repeat and coiled-coil centrosomal protein 1.	Si:ch211-262i1.6.	0.596
lrrcc1	rbis	ENSPREP00000020425	ENSPREP00000002638	Leucine rich repeat and coiled-coil centrosomal protein 1.	Si:ch211-282b22.1.	0.572
lrrcc1	wdr18	ENSPREP00000020425	ENSPREP00000007976	Leucine rich repeat and coiled-coil centrosomal protein 1.	WD repeat domain 18.	0.554