Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dock11Dedicator of cytokinesis 11; Belongs to the DOCK family. (2003 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.844
LOC103465423
Cell division cycle 42.
   
 0.844
LOC103472837
Uncharacterized protein.
   
 0.646
LOC103477993
Uncharacterized protein.
   
 0.646
LOC103477991
Uncharacterized protein.
   
 0.646
dock10
Dedicator of cytokinesis 10; Belongs to the DOCK family.
   
 0.642
arhgef16
Rho guanine nucleotide exchange factor (GEF) 16.
     
 0.605
rhoh
Ras homolog family member H.
   
 0.597
rhoq
Ras homolog family member Q.
   
 0.597
LOC103468820
BAI1-associated protein 2a.
      
 0.573
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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