Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hdac9Histone deacetylase 9b. (631 aa)    
Predicted Functional Partners:
Arid4a
Tudor domain-containing protein.
    
 0.749
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.749
LOC103461037
RAN binding protein 2.
   
 0.724
ENSPREP00000014094
NDK domain-containing protein.
  
 
 0.697
ENSPREP00000027150
Uncharacterized protein.
    
 0.691
sirt1
Sirtuin 1.
    
 0.655
ENSPREP00000028517
ANK_REP_REGION domain-containing protein.
   
 0.623
LOC103466357
DUF4201 domain-containing protein.
   
 
 0.620
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.619
ncor2
Nuclear receptor corepressor 2.
    
 0.616
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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