STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nphp1Nephronophthisis 1. (698 aa)    
Predicted Functional Partners:
rpgrip1l
RPGRIP1 like.
    
 0.998
nphp4
Uncharacterized protein.
   
 0.989
ENSPREP00000015938
Nephronophthisis 4.
   
 0.989
rpgr
Uncharacterized protein.
    
 0.964
ENSPREP00000022685
Abelson helper integration site 1.
    
 0.924
tmem67
Transmembrane protein 67.
   
  
 0.924
invs
Inversin.
    
 0.896
cc2d2a
Coiled-coil and C2 domain containing 2A.
   
  
 0.843
nphp3
Nephronophthisis 3.
    
 0.820
LOC103471469
Transmembrane protein 216.
      
 0.816
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.