STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARHGAP6Rho GTPase activating protein 6. (507 aa)    
Predicted Functional Partners:
LOC103482232
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
      
 0.605
LOC103463131
Abnormal spindle microtubule assembly.
   
 
 0.588
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
      
 0.580
dctd
dCMP deaminase.
      
 0.579
kif11
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.578
ttk
Ttk protein kinase.
   
    0.549
espl1
Extra spindle pole bodies like 1, separase.
   
  
 0.533
ndc80
NDC80 kinetochore complex component.
   
    0.526
agmo
Alkylglycerol monooxygenase; Belongs to the sterol desaturase family.
    
 
 0.525
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.524
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.