STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tm9sf3Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (586 aa)    
Predicted Functional Partners:
cers1
Ceramide synthase 1.
 
      0.590
zfpl1
Zinc finger protein-like 1.
      
 0.546
trmt6
tRNA methyltransferase 6.
      
 0.546
mrpl16
Mitochondrial ribosomal protein L16.
      
 0.476
fbxo8
F-box protein 8.
      
 0.471
hspa13
Heat shock protein 70 family, member 13.
   
  
 0.443
ift74
Intraflagellar transport 74.
      
 0.424
tmem205
Transmembrane protein 205.
      
 0.420
gramd1c
GRAM domain containing 1c.
      
 0.416
LOC103466940
Transmembrane p24 trafficking protein 4.
   
  
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.