STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phf13PHD finger protein 13. (326 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
   0.962
mcrs1
Microspherule protein 1.
   
 0.876
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.848
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.808
Tex30
Testis expressed 30.
    
 0.808
blvra
Biliverdin reductase A.
    
   0.790
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.695
Arid4a
Tudor domain-containing protein.
   
 
 0.693
arid4b
Translocase of outer mitochondrial membrane 20.
   
 
 0.693
nceh1
Neutral cholesterol ester hydrolase 1a.
   
  
 0.671
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.