STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Vps13cVacuolar protein sorting 13 homolog C. (2276 aa)    
Predicted Functional Partners:
ENSPREP00000002652
Uncharacterized protein.
 
     0.938
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.731
synj1
Synaptojanin 1.
   
 
 0.681
ENSPREP00000000518
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
    
   0.650
pde10a
Phosphodiesterase.
    
 
 0.607
rcc1
Regulator of chromosome condensation 1.
      
 0.603
nr4a2
Nuclear receptor subfamily 4, group A, member 2b.
      
 0.584
spg11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.569
nudcd1
NudC domain containing 1.
    
   0.565
vps39
VPS39 subunit of HOPS complex.
   
 
 0.540
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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