ENSPREP00000002720 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000002720

Uncharacterized protein. (221 aa)

Predicted Functional Partners:

ENSPREP00000002434

0.935

LOC103457799

0.664

igf1

0.643

fcer1g

0.622

ENSPREP00000001257

0.622

LOC103477977

0.585

ptprc

0.471

ENSPREP00000024881

0.466

syk

0.442

LOC103468233

0.442

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001257	ENSPREP00000002720	ENSPREP00000001257	ENSPREP00000002720	Uncharacterized protein.	Uncharacterized protein.	0.622
ENSPREP00000001257	LOC103457799	ENSPREP00000001257	ENSPREP00000033223	Uncharacterized protein.	Uncharacterized protein.	0.466
ENSPREP00000001257	LOC103468233	ENSPREP00000001257	ENSPREP00000012417	Uncharacterized protein.	Tyrosine-protein kinase.	0.791
ENSPREP00000001257	syk	ENSPREP00000001257	ENSPREP00000006334	Uncharacterized protein.	Tyrosine-protein kinase.	0.791
ENSPREP00000002434	ENSPREP00000002720	ENSPREP00000002434	ENSPREP00000002720	Uncharacterized protein.	Uncharacterized protein.	0.935
ENSPREP00000002720	ENSPREP00000001257	ENSPREP00000002720	ENSPREP00000001257	Uncharacterized protein.	Uncharacterized protein.	0.622
ENSPREP00000002720	ENSPREP00000002434	ENSPREP00000002720	ENSPREP00000002434	Uncharacterized protein.	Uncharacterized protein.	0.935
ENSPREP00000002720	ENSPREP00000024881	ENSPREP00000002720	ENSPREP00000024881	Uncharacterized protein.	IGv domain-containing protein.	0.466
ENSPREP00000002720	LOC103457799	ENSPREP00000002720	ENSPREP00000033223	Uncharacterized protein.	Uncharacterized protein.	0.664
ENSPREP00000002720	LOC103468233	ENSPREP00000002720	ENSPREP00000012417	Uncharacterized protein.	Tyrosine-protein kinase.	0.442
ENSPREP00000002720	LOC103477977	ENSPREP00000002720	ENSPREP00000018685	Uncharacterized protein.	Uncharacterized protein.	0.585
ENSPREP00000002720	fcer1g	ENSPREP00000002720	ENSPREP00000001118	Uncharacterized protein.	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide.	0.622
ENSPREP00000002720	igf1	ENSPREP00000002720	ENSPREP00000010429	Uncharacterized protein.	Insulin-like growth factor 1.	0.643
ENSPREP00000002720	ptprc	ENSPREP00000002720	ENSPREP00000018309	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.471
ENSPREP00000002720	syk	ENSPREP00000002720	ENSPREP00000006334	Uncharacterized protein.	Tyrosine-protein kinase.	0.442
ENSPREP00000024881	ENSPREP00000002720	ENSPREP00000024881	ENSPREP00000002720	IGv domain-containing protein.	Uncharacterized protein.	0.466
ENSPREP00000024881	LOC103457799	ENSPREP00000024881	ENSPREP00000033223	IGv domain-containing protein.	Uncharacterized protein.	0.509
ENSPREP00000024881	LOC103477977	ENSPREP00000024881	ENSPREP00000018685	IGv domain-containing protein.	Uncharacterized protein.	0.617
ENSPREP00000024881	ptprc	ENSPREP00000024881	ENSPREP00000018309	IGv domain-containing protein.	Protein tyrosine phosphatase receptor type C.	0.401
LOC103457799	ENSPREP00000001257	ENSPREP00000033223	ENSPREP00000001257	Uncharacterized protein.	Uncharacterized protein.	0.466