STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002748Myogenic factor. (237 aa)    
Predicted Functional Partners:
LOC103465574
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.785
LOC103463652
Transcription factor 3b.
    
 0.748
TCF4
Transcription factor 4.
    
 0.748
ENSPREP00000026287
Uncharacterized protein.
    
 0.748
tcf12
Transcription factor 12.
    
 0.748
LOC103466449
BHLH domain-containing protein.
    
 0.707
LOC103468460
E1A binding protein p300 b.
    
 
 0.699
LOC103482005
E1A binding protein p300 a.
    
 
 0.699
myog
Myogenin.
   
 0.650
LOC103464091
CREB binding protein a.
    
 
 0.646
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.