STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002748Myogenic factor. (237 aa)    
Predicted Functional Partners:
LOC103463652
Transcription factor 3b.
   
 0.661
TCF4
Transcription factor 4.
   
 0.661
ENSPREP00000026287
Uncharacterized protein.
   
 0.661
tcf12
Transcription factor 12.
   
 0.661
LOC103466449
BHLH domain-containing protein.
   
 0.656
ENSPREP00000024411
Uncharacterized protein.
   
 0.581
mef2b
Myocyte enhancer factor 2b.
    
 0.555
myog
Myogenin.
  
 
0.550
LOC103472498
MADS-box domain-containing protein.
    
 0.532
mef2d
Myocyte enhancer factor 2d.
    
 0.532
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.