STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002755ATG16 autophagy related 16-like 2 (S. cerevisiae). (304 aa)    
Predicted Functional Partners:
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.970
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.964
atg3
Autophagy-related protein 3.
   
 0.961
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 
 0.905
rb1cc1
RB1-inducible coiled-coil 1.
   
 
 0.896
atg10
Autophagy_act_C domain-containing protein.
    
 0.891
becn1
Beclin 1, autophagy related.
    
 0.889
LOC103468270
WD repeat domain, phosphoinositide interacting 1.
   
 0.872
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 0.872
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.872
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.