STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002771Sideroflexin 4. (244 aa)    
Predicted Functional Partners:
ENSPREP00000030212
Nanos homolog 2; Belongs to the nanos family.
      
 0.634
LOC103476923
Cytochrome c oxidase assembly homolog 15 (yeast).
   
 
 0.623
mtfr1
Mitochondrial fission regulator 1.
      
 0.614
tmem186
Transmembrane protein 186.
     
 0.609
tsfm
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
   
  
 0.604
opa3
Outer mitochondrial membrane lipid metabolism regulator OPA3.
      
 0.595
sfxn2
Sidoreflexin.
    
 
 0.589
slc66a3
Solute carrier family 66 member 3.
      
 0.556
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
    
 
 0.528
ndufb6
NADH:ubiquinone oxidoreductase subunit B.
   
 
 0.525
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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