pdcl protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

pdcl

Phosducin-like. (306 aa)

Predicted Functional Partners:

cct7

0.907

cct5

0.889

cct3

0.882

cct2

0.852

LOC103464516

0.825

gnb1

0.825

GNB4

0.825

LOC103475780

0.825

tcp1

0.824

LOC103462170

0.813

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNB4	LOC103462170	ENSPREP00000022213	ENSPREP00000007905	G protein subunit beta 4.	Guanine nucleotide binding protein (G protein), beta 5b.	0.449
GNB4	cct2	ENSPREP00000022213	ENSPREP00000008383	G protein subunit beta 4.	Chaperonin containing TCP1, subunit 2 (beta).	0.643
GNB4	cct3	ENSPREP00000022213	ENSPREP00000023193	G protein subunit beta 4.	T-complex protein 1 subunit gamma.	0.623
GNB4	cct5	ENSPREP00000022213	ENSPREP00000021025	G protein subunit beta 4.	Chaperonin containing TCP1, subunit 5 (epsilon).	0.821
GNB4	cct7	ENSPREP00000022213	ENSPREP00000001527	G protein subunit beta 4.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.643
GNB4	pdcl	ENSPREP00000022213	ENSPREP00000002790	G protein subunit beta 4.	Phosducin-like.	0.825
GNB4	tcp1	ENSPREP00000022213	ENSPREP00000008359	G protein subunit beta 4.	T-complex 1.	0.667
LOC103462170	GNB4	ENSPREP00000007905	ENSPREP00000022213	Guanine nucleotide binding protein (G protein), beta 5b.	G protein subunit beta 4.	0.449
LOC103462170	LOC103464516	ENSPREP00000007905	ENSPREP00000006363	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.449
LOC103462170	LOC103475780	ENSPREP00000007905	ENSPREP00000033242	Guanine nucleotide binding protein (G protein), beta 5b.	WD_REPEATS_REGION domain-containing protein.	0.449
LOC103462170	cct2	ENSPREP00000007905	ENSPREP00000008383	Guanine nucleotide binding protein (G protein), beta 5b.	Chaperonin containing TCP1, subunit 2 (beta).	0.873
LOC103462170	cct3	ENSPREP00000007905	ENSPREP00000023193	Guanine nucleotide binding protein (G protein), beta 5b.	T-complex protein 1 subunit gamma.	0.780
LOC103462170	cct5	ENSPREP00000007905	ENSPREP00000021025	Guanine nucleotide binding protein (G protein), beta 5b.	Chaperonin containing TCP1, subunit 5 (epsilon).	0.952
LOC103462170	cct7	ENSPREP00000007905	ENSPREP00000001527	Guanine nucleotide binding protein (G protein), beta 5b.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.873
LOC103462170	gnb1	ENSPREP00000007905	ENSPREP00000015702	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.449
LOC103462170	pdcl	ENSPREP00000007905	ENSPREP00000002790	Guanine nucleotide binding protein (G protein), beta 5b.	Phosducin-like.	0.813
LOC103462170	tcp1	ENSPREP00000007905	ENSPREP00000008359	Guanine nucleotide binding protein (G protein), beta 5b.	T-complex 1.	0.872
LOC103464516	LOC103462170	ENSPREP00000006363	ENSPREP00000007905	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide binding protein (G protein), beta 5b.	0.449
LOC103464516	cct2	ENSPREP00000006363	ENSPREP00000008383	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Chaperonin containing TCP1, subunit 2 (beta).	0.643
LOC103464516	cct3	ENSPREP00000006363	ENSPREP00000023193	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	T-complex protein 1 subunit gamma.	0.623