STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim59Tripartite motif containing 59. (433 aa)    
Predicted Functional Partners:
rnft1
Ring finger protein, transmembrane 1.
    
 0.602
trim23
Tripartite motif containing 23.
    
 0.551
ecsit
ECSIT signalling integrator.
   
 
 0.541
trim32
Tripartite motif containing 32.
    
 0.531
sqstm1
Sequestosome 1.
    
 0.527
nsrp1
Nuclear speckle splicing regulatory protein 1.
    
 
 0.515
kpna4
Importin subunit alpha; Belongs to the importin alpha family.
    
 
 0.506
kpna3
Importin subunit alpha; Belongs to the importin alpha family.
    
 
 0.502
sgta
Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.
      
 0.483
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.417
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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