ENSPREP00000002868 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000002868

Uncharacterized protein. (117 aa)

Predicted Functional Partners:

ENSPREP00000002902

0.773

cdc5l

0.560

u2af2

0.550

LOC103469439

0.550

snrnp70

0.510

prpf38a

0.446

LOC103461139

0.433

lemd3

0.433

rbm39

0.433

LOC103471249

0.425

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000002868	ENSPREP00000002902	ENSPREP00000002868	ENSPREP00000002902	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.773
ENSPREP00000002868	LOC103461139	ENSPREP00000002868	ENSPREP00000022454	Uncharacterized protein.	RNA binding motif protein 39b.	0.433
ENSPREP00000002868	LOC103469439	ENSPREP00000002868	ENSPREP00000019318	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.550
ENSPREP00000002868	LOC103471249	ENSPREP00000002868	ENSPREP00000005712	Uncharacterized protein.	CDC-like kinase 4a.	0.425
ENSPREP00000002868	cdc5l	ENSPREP00000002868	ENSPREP00000006451	Uncharacterized protein.	CDC5 cell division cycle 5-like (S. pombe).	0.560
ENSPREP00000002868	lemd3	ENSPREP00000002868	ENSPREP00000026156	Uncharacterized protein.	LEM domain containing 3.	0.433
ENSPREP00000002868	prpf38a	ENSPREP00000002868	ENSPREP00000003987	Uncharacterized protein.	Pre-mRNA processing factor 38A.	0.446
ENSPREP00000002868	rbm39	ENSPREP00000002868	ENSPREP00000031203	Uncharacterized protein.	Uncharacterized protein.	0.433
ENSPREP00000002868	snrnp70	ENSPREP00000002868	ENSPREP00000008024	Uncharacterized protein.	Small nuclear ribonucleoprotein 70 (U1).	0.510
ENSPREP00000002868	u2af2	ENSPREP00000002868	ENSPREP00000012894	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.550
ENSPREP00000002902	ENSPREP00000002868	ENSPREP00000002902	ENSPREP00000002868	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.773
ENSPREP00000002902	LOC103461139	ENSPREP00000002902	ENSPREP00000022454	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RNA binding motif protein 39b.	0.499
ENSPREP00000002902	LOC103469439	ENSPREP00000002902	ENSPREP00000019318	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.559
ENSPREP00000002902	LOC103471249	ENSPREP00000002902	ENSPREP00000005712	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CDC-like kinase 4a.	0.460
ENSPREP00000002902	cdc5l	ENSPREP00000002902	ENSPREP00000006451	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CDC5 cell division cycle 5-like (S. pombe).	0.564
ENSPREP00000002902	lemd3	ENSPREP00000002902	ENSPREP00000026156	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	LEM domain containing 3.	0.433
ENSPREP00000002902	prpf38a	ENSPREP00000002902	ENSPREP00000003987	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Pre-mRNA processing factor 38A.	0.458
ENSPREP00000002902	rbm39	ENSPREP00000002902	ENSPREP00000031203	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.499
ENSPREP00000002902	snrnp70	ENSPREP00000002902	ENSPREP00000008024	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Small nuclear ribonucleoprotein 70 (U1).	0.525
ENSPREP00000002902	u2af2	ENSPREP00000002902	ENSPREP00000012894	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.559