STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox9HMG box domain-containing protein. (482 aa)    
Predicted Functional Partners:
LOC103457845
Runt-related transcription factor.
   
 0.788
LOC103470736
Doublesex and mab-3 related transcription factor 1.
    
 0.776
amh
Anti-Mullerian hormone.
    
 0.714
ENSPREP00000011180
Nuclear receptor subfamily 5, group A, member 2.
    
 0.682
wnt4
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 0.677
figla
Folliculogenesis specific bHLH transcription factor.
    
 
 0.664
runx3
Runt-related transcription factor.
   
 0.663
LOC103477443
Runt-related transcription factor.
   
 0.663
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.656
gata4
GATA binding protein 4.
    
 0.656
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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