STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrt4Si:dkey-31f5.11. (1204 aa)    
Predicted Functional Partners:
tmem53
Transmembrane protein 53.
      
 0.795
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.690
rps27a
Ribosomal protein S27a.
    
 0.690
LOC103475981
Ubiquitin-like domain-containing protein.
   
 0.675
LOC103478889
NEDD8 ubiquitin like modifier.
   
 0.675
rbm28
RNA binding motif protein 28.
      
 0.603
senp8
SUMO peptidase family member, NEDD8 specific.
    
 0.602
prrt1
Proline-rich transmembrane protein 1.
    
 
 0.589
Sh3yl1
SH3 and SYLF domain containing 1.
   
  
 0.567
zfand4
Zinc finger, AN1-type domain 4.
    
 0.556
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.