STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trmotRNA methyltransferase O. (369 aa)    
Predicted Functional Partners:
hsbp1
Heat shock factor binding protein 1a.
    
   0.792
tango2
Transport and golgi organization 2 homolog (Drosophila).
      
 0.685
LOC103471791
Cytochrome c oxidase assembly factor COX18.
      
 0.670
timm21
Uncharacterized protein.
      
 0.670
LOC103470412
VPS37C subunit of ESCRT-I.
      
 0.667
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
      
 0.666
LOC103475137
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
  
  
 0.574
LOC103473565
Poly [ADP-ribose] polymerase.
    
   0.560
ankzf1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
      
 0.560
LOC103469721
Poly [ADP-ribose] polymerase.
    
   0.560
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.