ENSPREP00000002923 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000002923

DHC_N1 domain-containing protein. (414 aa)

Predicted Functional Partners:

LOC103479331

0.938

DNAH11

0.935

ENSPREP00000019791

0.929

ENSPREP00000019813

0.926

ENSPREP00000025896

0.899

ENSPREP00000032345

0.899

Dnah3

0.898

ENSPREP00000032328

0.807

Dnah1

0.785

ENSPREP00000019825

0.780

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNAH11	ENSPREP00000002923	ENSPREP00000003239	ENSPREP00000002923	Dynein axonemal heavy chain 11.	DHC_N1 domain-containing protein.	0.935
Dnah1	Dnah3	ENSPREP00000025833	ENSPREP00000001836	Uncharacterized protein.	AAA_6 domain-containing protein.	0.950
Dnah1	ENSPREP00000002923	ENSPREP00000025833	ENSPREP00000002923	Uncharacterized protein.	DHC_N1 domain-containing protein.	0.785
Dnah1	ENSPREP00000019791	ENSPREP00000025833	ENSPREP00000019791	Uncharacterized protein.	Uncharacterized protein.	0.942
Dnah1	ENSPREP00000019813	ENSPREP00000025833	ENSPREP00000019813	Uncharacterized protein.	AAA_6 domain-containing protein.	0.942
Dnah1	ENSPREP00000025896	ENSPREP00000025833	ENSPREP00000025896	Uncharacterized protein.	AAA_6 domain-containing protein.	0.945
Dnah1	ENSPREP00000032345	ENSPREP00000025833	ENSPREP00000032345	Uncharacterized protein.	AAA_6 domain-containing protein.	0.943
Dnah3	Dnah1	ENSPREP00000001836	ENSPREP00000025833	AAA_6 domain-containing protein.	Uncharacterized protein.	0.950
Dnah3	ENSPREP00000002923	ENSPREP00000001836	ENSPREP00000002923	AAA_6 domain-containing protein.	DHC_N1 domain-containing protein.	0.898
Dnah3	ENSPREP00000019791	ENSPREP00000001836	ENSPREP00000019791	AAA_6 domain-containing protein.	Uncharacterized protein.	0.940
Dnah3	ENSPREP00000019825	ENSPREP00000001836	ENSPREP00000019825	AAA_6 domain-containing protein.	AAA_9 domain-containing protein.	0.611
Dnah3	ENSPREP00000025896	ENSPREP00000001836	ENSPREP00000025896	AAA_6 domain-containing protein.	AAA_6 domain-containing protein.	0.935
Dnah3	ENSPREP00000032328	ENSPREP00000001836	ENSPREP00000032328	AAA_6 domain-containing protein.	Uncharacterized protein.	0.938
Dnah3	LOC103479331	ENSPREP00000001836	ENSPREP00000019914	AAA_6 domain-containing protein.	Uncharacterized protein.	0.928
ENSPREP00000002923	DNAH11	ENSPREP00000002923	ENSPREP00000003239	DHC_N1 domain-containing protein.	Dynein axonemal heavy chain 11.	0.935
ENSPREP00000002923	Dnah1	ENSPREP00000002923	ENSPREP00000025833	DHC_N1 domain-containing protein.	Uncharacterized protein.	0.785
ENSPREP00000002923	Dnah3	ENSPREP00000002923	ENSPREP00000001836	DHC_N1 domain-containing protein.	AAA_6 domain-containing protein.	0.898
ENSPREP00000002923	ENSPREP00000019791	ENSPREP00000002923	ENSPREP00000019791	DHC_N1 domain-containing protein.	Uncharacterized protein.	0.929
ENSPREP00000002923	ENSPREP00000019813	ENSPREP00000002923	ENSPREP00000019813	DHC_N1 domain-containing protein.	AAA_6 domain-containing protein.	0.926
ENSPREP00000002923	ENSPREP00000019825	ENSPREP00000002923	ENSPREP00000019825	DHC_N1 domain-containing protein.	AAA_9 domain-containing protein.	0.780