STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ufl1UFM1-specific ligase 1. (792 aa)    
Predicted Functional Partners:
cdk5rap3
CDK5 regulatory subunit associated protein 3.
   
 
 0.997
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
    
 
 0.989
ddrgk1
Uncharacterized protein.
    
 
 0.989
ufm1
Ubiquitin-fold modifier 1.
   
 
 0.964
uba5
Ubiquitin-like modifier activating enzyme 5.
   
 
 0.895
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.851
LOC103470872
Ribosomal protein L26.
    
 
 0.814
ltn1
RING-type domain-containing protein.
   
 0.796
srprb
SRP receptor subunit beta.
      
 0.785
eif6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
 
 0.782
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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