STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ufl1UFM1-specific ligase 1. (792 aa)    
Predicted Functional Partners:
cdk5rap3
CDK5 regulatory subunit associated protein 3.
   
 
 0.954
ddrgk1
Uncharacterized protein.
    
 
 0.953
uba5
Ubiquitin-like modifier activating enzyme 5.
   
 
 0.853
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
    
 
 0.792
ufm1
Ubiquitin-fold modifier 1.
   
 
 0.745
LOC103466155
UEV domain-containing protein.
   
 
 0.684
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 
 0.676
ufsp2
Ufm1-specific peptidase 2.
   
  
 0.668
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 
 0.567
LOC103465053
Ubiquitin-like modifier activating enzyme 3.
   
 
 0.567
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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