STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc6a8Solute carrier family 6 member 8. (717 aa)    
Predicted Functional Partners:
ENSPREP00000032532
Uncharacterized protein.
  
     0.526
stox1
Storkhead box 1.
      
 0.518
CAPN6
Calpain 6; Belongs to the peptidase C2 family.
      
 0.518
hdac9
Histone deacetylase 9b.
      
 0.514
bambi
BMP and activin membrane-bound inhibitor (Xenopus laevis) homolog a.
      
 0.510
zmpste24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.488
optn
Optineurin.
   
  
 0.484
ENSPREP00000018760
Protein kinase domain-containing protein.
      
 0.469
gnl3l
Guanine nucleotide binding protein-like 3 (nucleolar)-like.
      
 0.462
mecp2
Methyl CpG binding protein 2.
      
 0.460
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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