STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam204aFamily with sequence similarity 204 member A. (232 aa)    
Predicted Functional Partners:
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
  
 0.730
mfap3l
Microfibril associated protein 3 like.
      
 0.670
klhl20
Kelch-like family member 20.
   
    0.637
TMEM184C
Transmembrane protein 184C.
      
 0.613
tmem184c
Transmembrane protein 184C.
      
 0.613
naa10
N(alpha)-acetyltransferase 10, NatA catalytic subunit.
      
 0.602
chchd3
MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
      
 0.590
rab11fip2
RAB11 family interacting protein 2 (class I).
      
 0.586
TMEM179
Transmembrane protein 179.
      
 0.579
hsdl2
Hydroxysteroid dehydrogenase like 2.
      
 0.579
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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