STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467737Uncharacterized protein. (109 aa)    
Predicted Functional Partners:
tpd52
Tumor protein D52.
   
   0.798
tpd52l1
Tpd52 like 1.
    
   0.792
gabpa
GA binding protein transcription factor subunit alpha.
    
   0.758
gabpb2
GA binding protein transcription factor subunit beta 2a.
    
  0.733
gak
Cyclin G associated kinase.
     
 0.614
nub1
Negative regulator of ubiquitin-like proteins 1.
      
 0.523
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
      
 0.502
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
    
 
 0.483
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
     
 0.469
ppp5c
Serine/threonine-protein phosphatase.
      
 0.462
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.