STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arntlAryl hydrocarbon receptor nuclear translocator-like 1a. (602 aa)    
Predicted Functional Partners:
LOC103475715
Neuronal PAS domain protein 2.
   
0.856
npas4
Neuronal PAS domain protein 4a.
    
0.810
LOC103468951
Uncharacterized protein.
   
0.808
CLOCK
Clock circadian regulator a.
   
0.808
ENSPREP00000012571
BHLH domain-containing protein.
    
 0.751
LOC103462600
Cryptochrome circadian regulator 5.
   
 0.703
LOC103459142
Cryptochrome circadian regulator 1a.
   
 0.688
LOC103466760
Cryptochrome circadian regulator 2.
   
 0.687
LOC103466198
Cryptochrome circadian regulator 1b.
   
 0.687
LOC103480497
Period circadian clock 1b.
    
0.671
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.