STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam20bFAM20B glycosaminoglycan xylosylkinase. (409 aa)    
Predicted Functional Partners:
uxs1
UDP-glucuronate decarboxylase 1.
      
 0.876
fjx1
Four-jointed box kinase 1.
      
 0.810
pxylp1
2-phosphoxylose phosphatase 1; Belongs to the histidine acid phosphatase family.
      
 0.779
gask1a
Golgi associated kinase 1A.
      
 0.758
xylt2
Xylosyltransferase II.
      
 0.716
LOC103469251
FAM20C golgi associated secretory pathway kinase a.
    
 0.700
ENSPREP00000000234
Family with sequence similarity 20 member C, like.
    
  0.698
LOC103468551
Fam20C domain-containing protein.
    
  0.698
xylt1
Xylosyltransferase I.
      
 0.696
LOC103469073
Xylosyltransferase I.
      
 0.696
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.