ENSPREP00000002996 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000002996

Si:dkey-25o16.4. (1359 aa)

Predicted Functional Partners:

uso1

0.739

stx5

0.729

golga2

0.723

acbd3

0.696

LOC103475643

0.606

gosr1

0.606

ift20

0.546

tmed10

0.526

ckap5

0.519

ptk2

0.513

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000002996	LOC103475643	ENSPREP00000002996	ENSPREP00000012832	Si:dkey-25o16.4.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.606
ENSPREP00000002996	acbd3	ENSPREP00000002996	ENSPREP00000001915	Si:dkey-25o16.4.	Acyl-Coenzyme A binding domain containing 3.	0.696
ENSPREP00000002996	ckap5	ENSPREP00000002996	ENSPREP00000029455	Si:dkey-25o16.4.	Cytoskeleton associated protein 5.	0.519
ENSPREP00000002996	golga2	ENSPREP00000002996	ENSPREP00000023585	Si:dkey-25o16.4.	Golgin A2.	0.723
ENSPREP00000002996	gosr1	ENSPREP00000002996	ENSPREP00000031840	Si:dkey-25o16.4.	Golgi SNAP receptor complex member 1.	0.606
ENSPREP00000002996	ift20	ENSPREP00000002996	ENSPREP00000023417	Si:dkey-25o16.4.	Intraflagellar transport 20 homolog (Chlamydomonas).	0.546
ENSPREP00000002996	ptk2	ENSPREP00000002996	ENSPREP00000014357	Si:dkey-25o16.4.	Protein tyrosine kinase 2ab; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.513
ENSPREP00000002996	stx5	ENSPREP00000002996	ENSPREP00000022289	Si:dkey-25o16.4.	Syntaxin 5A; Belongs to the syntaxin family.	0.729
ENSPREP00000002996	tmed10	ENSPREP00000002996	ENSPREP00000028846	Si:dkey-25o16.4.	Transmembrane p24 trafficking protein 10.	0.526
ENSPREP00000002996	uso1	ENSPREP00000002996	ENSPREP00000002486	Si:dkey-25o16.4.	USO1 vesicle transport factor.	0.739
LOC103475643	ENSPREP00000002996	ENSPREP00000012832	ENSPREP00000002996	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Si:dkey-25o16.4.	0.606
LOC103475643	golga2	ENSPREP00000012832	ENSPREP00000023585	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Golgin A2.	0.898
LOC103475643	gosr1	ENSPREP00000012832	ENSPREP00000031840	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Golgi SNAP receptor complex member 1.	0.901
LOC103475643	stx5	ENSPREP00000012832	ENSPREP00000022289	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 5A; Belongs to the syntaxin family.	0.982
LOC103475643	uso1	ENSPREP00000012832	ENSPREP00000002486	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	USO1 vesicle transport factor.	0.901
acbd3	ENSPREP00000002996	ENSPREP00000001915	ENSPREP00000002996	Acyl-Coenzyme A binding domain containing 3.	Si:dkey-25o16.4.	0.696
acbd3	stx5	ENSPREP00000001915	ENSPREP00000022289	Acyl-Coenzyme A binding domain containing 3.	Syntaxin 5A; Belongs to the syntaxin family.	0.406
ckap5	ENSPREP00000002996	ENSPREP00000029455	ENSPREP00000002996	Cytoskeleton associated protein 5.	Si:dkey-25o16.4.	0.519
golga2	ENSPREP00000002996	ENSPREP00000023585	ENSPREP00000002996	Golgin A2.	Si:dkey-25o16.4.	0.723
golga2	LOC103475643	ENSPREP00000023585	ENSPREP00000012832	Golgin A2.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.898