STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103459029Protocadherin 8. (968 aa)    
Predicted Functional Partners:
ST3GAL1-7
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
      
 0.578
rhbdl1
Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.
   
  
 0.523
egfl6
EGF-like-domain, multiple 6.
    
 0.517
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.515
cog3
Component of oligomeric golgi complex 3.
      
 0.514
ENSPREP00000026574
ANK_REP_REGION domain-containing protein.
    
 0.513
LOC103467650
G_PROTEIN_RECEP_F3_4 domain-containing protein.
   
  
 0.507
LOC103464721
Glutamate receptor, metabotropic 4.
   
  
 0.507
wdr24
WD repeat domain 24.
      
 0.503
ARHGAP6-2
Rho GTPase activating protein 6.
      
 0.488
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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