STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103480162RNA binding motif protein 4.3. (324 aa)    
Predicted Functional Partners:
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.494
runx3
Runt-related transcription factor.
    
  0.452
LOC103457845
Runt-related transcription factor.
    
  0.452
LOC103477443
Runt-related transcription factor.
    
  0.452
LOC103474154
Serine and arginine rich splicing factor 1a.
   
 
 0.443
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.443
LOC103475485
Uncharacterized protein.
   
 
 0.443
LOC103469127
Aly/REF export factor.
   
  
 0.441
tra2b
Transformer 2 beta homolog.
  
   0.435
Snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
   0.434
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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