Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000003031Uncharacterized protein. (125 aa)    
Predicted Functional Partners:
LOC103465649
Troponin T type 3a (skeletal, fast).
   
 0.720
ENSPREP00000027277
Uncharacterized protein.
   
 0.720
ENSPREP00000018067
Troponin T type 2b (cardiac).
   
 0.694
LOC103467415
Troponin T type 2a (cardiac).
   
 0.694
LOC103465824
Uncharacterized protein.
   
 0.678
ENSPREP00000014606
Uncharacterized protein.
   
 0.678
ENSPREP00000018153
Troponin T type 1 (skeletal, slow).
   
 0.678
tnnt1
Uncharacterized protein.
   
 0.678
scaf1
SR-related CTD-associated factor 1.
      
 0.598
LOC103468062
Troponin C type 1b (slow).
   
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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