STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc167Uncharacterized protein. (107 aa)    
Predicted Functional Partners:
arfgef3
ARFGEF family member 3.
      
 0.771
chmp7
Charged multivesicular body protein 7.
      
 0.706
LOC103468804
Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.
      
 0.604
Pkia
Uncharacterized protein.
      
 0.567
LOC103482518
Uncharacterized protein.
      
 0.567
prkcsh
Protein kinase C substrate 80K-H.
      
 0.495
LOC103480661
EF-hand domain-containing protein.
      
 0.495
sac3d1
Si:zfos-452g4.1.
      
 0.482
ccdc178
Si:dkeyp-7a3.1.
      
 0.478
RRM1
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
      
 0.461
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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