STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clg5h1orf74Zgc:112163. (264 aa)    
Predicted Functional Partners:
rfc5
Replication factor C (activator 1) 5.
      
 0.471
cwf19l1
CWF19 like cell cycle control factor 1.
      
 0.469
nup155
Nucleoporin 155.
      
 0.443
acp5
Tartrate-resistant acid phosphatase type 5.
      
 0.434
dhx36
DEAH (Asp-Glu-Ala-His) box polypeptide 36.
      
 0.434
plce1
Phospholipase C, epsilon 1.
      
 0.433
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
      
 0.424
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.