LOC103470384 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103470384

Limb and CNS expressed 1. (254 aa)

Predicted Functional Partners:

Cwc25

0.680

clg11h1orf109

0.680

rubcnl

0.680

mocs3

0.658

ENSPREP00000005063

0.655

LOC103475525

0.655

LOC103458447

0.630

ENSPREP00000021715

0.629

ENSPREP00000021838

0.618

LOC103470390

0.607

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cwc25	LOC103458447	ENSPREP00000005308	ENSPREP00000015749	Cir_N domain-containing protein.	Src homology 2 domain containing transforming protein D, a.	0.984
Cwc25	LOC103470384	ENSPREP00000005308	ENSPREP00000003082	Cir_N domain-containing protein.	Limb and CNS expressed 1.	0.680
Cwc25	clg11h1orf109	ENSPREP00000005308	ENSPREP00000013965	Cir_N domain-containing protein.	C19h1orf109 homolog (H. sapiens).	0.752
Cwc25	mocs3	ENSPREP00000005308	ENSPREP00000000990	Cir_N domain-containing protein.	Adenylyltransferase and sulfurtransferase MOCS3; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...]	0.743
Cwc25	rubcnl	ENSPREP00000005308	ENSPREP00000031294	Cir_N domain-containing protein.	Rubicon like autophagy enhancer.	0.752
ENSPREP00000005063	ENSPREP00000021715	ENSPREP00000005063	ENSPREP00000021715	Uncharacterized protein.	Uncharacterized protein.	0.527
ENSPREP00000005063	ENSPREP00000021838	ENSPREP00000005063	ENSPREP00000021838	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSPREP00000005063	LOC103470384	ENSPREP00000005063	ENSPREP00000003082	Uncharacterized protein.	Limb and CNS expressed 1.	0.655
ENSPREP00000005063	LOC103475525	ENSPREP00000005063	ENSPREP00000021265	Uncharacterized protein.	FAT atypical cadherin 3b.	0.425
ENSPREP00000021715	ENSPREP00000005063	ENSPREP00000021715	ENSPREP00000005063	Uncharacterized protein.	Uncharacterized protein.	0.527
ENSPREP00000021715	ENSPREP00000021838	ENSPREP00000021715	ENSPREP00000021838	Uncharacterized protein.	Uncharacterized protein.	0.940
ENSPREP00000021715	LOC103470384	ENSPREP00000021715	ENSPREP00000003082	Uncharacterized protein.	Limb and CNS expressed 1.	0.629
ENSPREP00000021715	LOC103475525	ENSPREP00000021715	ENSPREP00000021265	Uncharacterized protein.	FAT atypical cadherin 3b.	0.425
ENSPREP00000021838	ENSPREP00000005063	ENSPREP00000021838	ENSPREP00000005063	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSPREP00000021838	ENSPREP00000021715	ENSPREP00000021838	ENSPREP00000021715	Uncharacterized protein.	Uncharacterized protein.	0.940
ENSPREP00000021838	LOC103470384	ENSPREP00000021838	ENSPREP00000003082	Uncharacterized protein.	Limb and CNS expressed 1.	0.618
ENSPREP00000021838	LOC103475525	ENSPREP00000021838	ENSPREP00000021265	Uncharacterized protein.	FAT atypical cadherin 3b.	0.437
LOC103458447	Cwc25	ENSPREP00000015749	ENSPREP00000005308	Src homology 2 domain containing transforming protein D, a.	Cir_N domain-containing protein.	0.984
LOC103458447	LOC103470384	ENSPREP00000015749	ENSPREP00000003082	Src homology 2 domain containing transforming protein D, a.	Limb and CNS expressed 1.	0.630
LOC103458447	clg11h1orf109	ENSPREP00000015749	ENSPREP00000013965	Src homology 2 domain containing transforming protein D, a.	C19h1orf109 homolog (H. sapiens).	0.743