STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH7Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (800 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.907
LOC103465321
Junction plakoglobin a.
    
 0.846
cdh12
Cadherin 12, type 2a (N-cadherin 2); Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.836
LOC103471147
Catenin (cadherin-associated protein), alpha 1.
   
 0.807
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.807
ENSPREP00000028495
Uncharacterized protein.
   
 0.807
LOC103477053
Uncharacterized protein.
   
 0.806
LOC103465658
Uncharacterized protein.
   
0.758
pcdh15
Protocadherin-related 15a.
   
0.758
LOC103481331
Uncharacterized protein.
   
0.758
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.