snd1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

snd1

Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (911 aa)

Predicted Functional Partners:

lrrc59

0.951

rps9

0.947

RPS20

0.918

mtdh

0.856

LOC103478193

0.856

nudcd1

0.835

rps3

0.830

AXL

0.803

ENSPREP00000030660

0.773

rbm28

0.758

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXL	nudcd1	ENSPREP00000026850	ENSPREP00000021213	AXL receptor tyrosine kinase.	NudC domain containing 1.	0.836
AXL	snd1	ENSPREP00000026850	ENSPREP00000003087	AXL receptor tyrosine kinase.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.803
ENSPREP00000030660	snd1	ENSPREP00000030660	ENSPREP00000003087	Uncharacterized protein.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.773
LOC103478193	lrrc59	ENSPREP00000025052	ENSPREP00000013225	Uncharacterized protein.	Leucine rich repeat containing 59.	0.432
LOC103478193	snd1	ENSPREP00000025052	ENSPREP00000003087	Uncharacterized protein.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.856
RPS20	rps3	ENSPREP00000013351	ENSPREP00000025968	Ribosomal protein S20.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
RPS20	rps9	ENSPREP00000013351	ENSPREP00000011631	Ribosomal protein S20.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
RPS20	snd1	ENSPREP00000013351	ENSPREP00000003087	Ribosomal protein S20.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.918
lrrc59	LOC103478193	ENSPREP00000013225	ENSPREP00000025052	Leucine rich repeat containing 59.	Uncharacterized protein.	0.432
lrrc59	mtdh	ENSPREP00000013225	ENSPREP00000012620	Leucine rich repeat containing 59.	Metadherin a.	0.432
lrrc59	rps9	ENSPREP00000013225	ENSPREP00000011631	Leucine rich repeat containing 59.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.401
lrrc59	snd1	ENSPREP00000013225	ENSPREP00000003087	Leucine rich repeat containing 59.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.951
mtdh	lrrc59	ENSPREP00000012620	ENSPREP00000013225	Metadherin a.	Leucine rich repeat containing 59.	0.432
mtdh	snd1	ENSPREP00000012620	ENSPREP00000003087	Metadherin a.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.856
nudcd1	AXL	ENSPREP00000021213	ENSPREP00000026850	NudC domain containing 1.	AXL receptor tyrosine kinase.	0.836
nudcd1	snd1	ENSPREP00000021213	ENSPREP00000003087	NudC domain containing 1.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.835
rbm28	snd1	ENSPREP00000021140	ENSPREP00000003087	RNA binding motif protein 28.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.758
rps3	RPS20	ENSPREP00000025968	ENSPREP00000013351	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein S20.	0.999
rps3	rps9	ENSPREP00000025968	ENSPREP00000011631	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
rps3	snd1	ENSPREP00000025968	ENSPREP00000003087	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.830

page 1 of 2

Server load: medium (66%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About