Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrt1Proline-rich transmembrane protein 1. (250 aa)    
Predicted Functional Partners:
CNIH2
Cornichon family AMPA receptor auxiliary protein 2.
    
 
 0.773
cnih3
Cornichon family AMPA receptor auxiliary protein 3.
    
 
 0.773
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 0.603
LOC103470494
Uncharacterized protein.
    
 0.603
prrt4
Si:dkey-31f5.11.
    
 
 0.589
LOC103466011
Uncharacterized protein.
    
 
 0.589
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
    
 0.581
LOC103472852
Calcium channel, voltage-dependent, gamma subunit 8a.
    
 0.576
LOC103478057
Calcium channel, voltage-dependent, gamma subunit 8b.
    
 0.576
ENSPREP00000034105
Proline-rich transmembrane protein 2.
    
 0.519
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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