STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bnc2Basonuclin 2. (1290 aa)    
Predicted Functional Partners:
ajap1
Adherens junctions associated protein 1.
      
 0.553
ENSPREP00000005251
POC5 centriolar protein homolog (Chlamydomonas).
      
 0.456
pax1
Paired box 1a.
      
 0.451
nucks1
Nuclear casein kinase and cyclin-dependent kinase substrate 1a.
      
 0.451
kif6
Kinesin family member 6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.428
pitx1
Homeobox protein.
   
  
 0.412
ENSPREP00000029336
Cadherin 13, H-cadherin (heart).
      
 0.410
CDH7
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.408
TNFRSF11B
TNF receptor superfamily member 11b.
      
 0.408
LOC103461629
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
      
 0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.