STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458997Glypican 6b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (563 aa)    
Predicted Functional Partners:
extl3
Exostosin-like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.
     
 0.687
LOC103478412
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.665
fam20b
FAM20B glycosaminoglycan xylosylkinase.
    
 0.651
LOC103479401
Glypican 5c; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.609
ENSPREP00000031676
Glypican 5b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.609
LOC103461950
Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.609
ENSPREP00000032877
Glypican 3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.609
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.596
LOC103461635
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.596
LOC103456683
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.596
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.