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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)    
Predicted Functional Partners:
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.999
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.999
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.999
ccdc12
Coiled-coil domain containing 12.
    
  0.998
slu7
SLU7 homolog, splicing factor.
   
 0.997
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.996
Cwc25
Cir_N domain-containing protein.
    
 0.996
yju2
YJU2 splicing factor homolog.
    
 0.996
cwf19l2
CWF19 like cell cycle control factor 2.
   
 0.996
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.994
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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