STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000003163Paired box 4. (287 aa)    
Predicted Functional Partners:
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.724
LOC103466531
Uncharacterized protein.
    
 
 0.681
ENSPREP00000003149
BHLH domain-containing protein.
  
 0.677
myb
V-myb avian myeloblastosis viral oncogene homolog.
     
 0.652
hras
HRas proto-oncogene, GTPase a.
    
 
 0.594
Neurog1
Neurogenin 1.
   
 0.579
oca2
Oculocutaneous albinism II.
      
 0.576
pdx1
Pancreatic and duodenal homeobox 1.
   
 0.575
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 0.573
nf1
Neurofibromin 1b.
      
 0.572
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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