Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snrpa1Small nuclear ribonucleoprotein polypeptide A. (254 aa)    
Predicted Functional Partners:
DHX15
DEAH-box helicase 15.
   
 0.998
sf3a3
Splicing factor 3a, subunit 3.
   
 0.998
rbm17
RNA binding motif protein 17.
   
 0.998
phf5a
PHD finger protein 5A.
   
 0.998
sf3a1
Splicing factor 3a, subunit 1.
   
 0.996
sf3b4
Splicing factor 3b, subunit 4.
   
 0.996
sf3a2
Splicing factor 3a, subunit 2.
    
 0.996
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.995
sf3b1
Splicing factor 3b, subunit 1.
   
 0.995
snrpg
Small nuclear ribonucleoprotein G.
   
 0.994
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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