Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000003193PWWP domain-containing protein. (100 aa)    
Predicted Functional Partners:
ENSPREP00000018215
HDGF like 2.
 
 
    0.925
psip1
LEDGF domain-containing protein.
 
 
    0.903
miga1
Mitoguardin 1.
      
 0.655
srrd
SRR1 domain containing.
      
 0.595
srbd1
S1 RNA binding domain 1.
   
  
 0.508
LOC103473557
ANTXR cell adhesion molecule 2b.
    
 0.505
cdk13
Cyclin-dependent kinase 13.
    
 
 0.458
cdk12
Cyclin-dependent kinase 12.
    
 
 0.458
LOC103478535
Paraoxonase 1.
      
 0.429
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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