STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471308FERM and PDZ domain containing 1b. (1706 aa)    
Predicted Functional Partners:
gpsm2
Uncharacterized protein.
    
 
 0.753
frmpd2
FERM and PDZ domain containing 2.
      
 0.652
LOC103471188
Germ cell nuclear acidic peptidase.
   
  
 0.592
CHRNA9
Cholinergic receptor nicotinic alpha 9 subunit.
      
 0.591
gpsm1
G protein signaling modulator 1b.
    
 
 0.583
ENSPREP00000026918
Uncharacterized protein.
    
 
 0.583
Fbxo10
F-box protein 10.
    
 
 0.573
sub1
PC4 domain-containing protein.
      
 0.572
SAPCD2
Suppressor APC domain containing 2.
      
 0.558
slc25a51
Solute carrier family 25 member 51b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.538
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.