STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mif4gdMIF4G domain containing a. (221 aa)    
Predicted Functional Partners:
LOC103464918
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).
    
   0.866
slbp
Stem-loop binding protein.
    
 
 0.854
ENSPREP00000001871
SLBP_RNA_bind domain-containing protein.
    
 
 0.719
LOC103467822
Zgc:193690.
    
   0.655
zcchc17
Zinc finger, CCHC domain containing 17.
    
 
 0.594
fnta
Farnesyltransferase, CAAX box, alpha.
      
 0.579
paip1
Poly(A) binding protein interacting protein 1.
      
 0.532
srp72
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
      
 0.525
eif2b3
Eukaryotic translation initiation factor 2B, subunit 3 gamma.
      
 0.503
rnmt
mRNA cap guanine-N7 methyltransferase.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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