STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox21SRY-box transcription factor 21b. (245 aa)    
Predicted Functional Partners:
LOC103473609
POU domain protein.
    
 0.739
ENSPREP00000011081
Nuclear apoptosis inducing factor 1.
    
   0.653
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.639
ENSPREP00000011180
Nuclear receptor subfamily 5, group A, member 2.
    
 0.499
gbx2
Gastrulation brain homeobox 2.
    
 0.492
LOC103465321
Junction plakoglobin a.
    
 0.477
LOC103472282
Uncharacterized protein.
    
 0.477
LOC103458615
NK2 homeobox 2a.
   
 
 0.452
LOC103473625
POU domain protein.
   
 0.448
ENSPREP00000013595
POU domain protein.
   
 0.446
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.