STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sfi1SFI1 centrin binding protein. (944 aa)    
Predicted Functional Partners:
cetn2
Centrin, EF-hand protein, 2.
    
 0.943
LOC103471875
Centrin 4.
    
 0.942
cetn3
Uncharacterized protein.
    
 0.929
ENSPREP00000031011
CDP-L-ribitol pyrophosphorylase A.
    
 0.843
rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      
 0.841
cramp1
Cramped chromatin regulator homolog 1.
      
 0.832
PLK1
Serine/threonine-protein kinase PLK.
    
 0.738
plk3
Serine/threonine-protein kinase PLK.
    
 0.738
plk2
Serine/threonine-protein kinase PLK.
    
 0.738
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
      
 0.727
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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